MDG5101

MDG5101 Bioinformatics 2011/2012

Project Presentations on 28th March 2012

• Group 1:
• Group 2:
• Group 3:
• Group 4:

MDG5101 Bioinformatics 2010/2011

Project Presentations on 30 March 2011

• Group 1: Topic 1: DNA Sequence Controls Expression of Gene Involved in Cancer
• Group 1 PDF (1.9MB)
  Presenters: Lee Seow Chong, Daphne Wong Pei Wen, Christine Hu Zhi-wen, Chen Chen, Chen Guobao

• Group 2: Topic 4: Bioinformatics of Avian Influenza Virus
• Group 2 PPT (4.4MB)
  Presenters: Wang Jocelyn, Teh Boon Eng, VIctoria Serelli Lee, Christine Koo, Goh Jen Nee

• Group 3: Topic 6: Anti Microbial Peptide Databases: Collection, curation and prediction
• Group 3 PPT (2.7MB)
  Presenters: Ong Yi Ting, Sangeetha Krishnamurthy, Huang Sihua, Anandi Narayanamoorthy, Prashant Rai

• Group 4: Topic 8: Caspases, apoptosis and the degradome
• Group 4 PDF (242KB)
  Presenters: Xiao Bin, Xiao Lin, Goh Jian Yuan, Shen Yujia, Ma Yankun.

• Group 5: Topic 7 :Dengue Virus Peptides and their Immunigenicity
• Group 5 PPT (1.9MB)
  Presenters: Yang Naidi, Shi Yin, Naeimeh Tayebi, Chin Weixin, Xie Min

MDG5101 Bioinformatics 2009/2010

Project Presentations on 5 April 2010

• DNA Sequence Controls Expression Of Gene Involved In Cancer (Bcl-2)
  • Group 1 PPT (7Mb)
    Presenters: Ong Khang Wei, Xie Li, Tiong Chi Xin, Poh Woon Cheng, Radhamani Kannaiyan, Geng Wei, Hou Yanyan
  • Group 2 PPT (7Mb)
    Presenters: Wu Wei, Tan Xin Fei, Hou Qian, Lin Qifeng, Miow Qing Hao, Tan Shi Hao
  • Group 5 PPT (3Mb) Supplementary videos (10Mb)
    Presenters: Lim Rui Fen Annabelle, Wang Shang Shang, Nur-Ezan Mohamad, Lee HanQing Jasinda

• Prions: Structural phenotype and disease
  • Group 6 PPT (5Mb)
    Presenters: He Huining, Zhu Yansong, Lu Kaihui, Iain Tan Bee Huat, Tan Chin Wen, Chionh Yok Hian, Sun Zijin

• Annotation of Chlamydia trachomatics Genome
  • Group 3 PPT (6Mb)
    Presenters: Gunaseelan s/o Narayanan, Lim Hui Kheng, Haris, Joanita binte Jasmen , Shriram Venkatesan, Nur-Afidah bte Mohamed Suhaimi, Resham Lal Gurung

• Bioinformatics of Avian Influenza Virus
  • Group 4 PPT (3Mb)
    Presenters: Guo Jing, Kim Ji Hyun, Ma May Thu, Ong Qi Rui, Poh Kay Wee, Zhu Yan

• Dengue Virus Peptides and their immunogenicity
  • Group 7 PPT (2Mb)
    Presenters: Chang Xin Lei Cynthia, Chwee Jyh Yun, Ng Jun Xiang, Soh Ying,Serena, Xiong Minru Gordon

MDG5101 Bioinformatics 2008/2009

Project Presentations on 13 April 2009

• DNA Sequence Controls Expression Of Gene Involved In Cancer (Bcl-2)
  • PPT (5Mb)
    Presenters: Yeo Wee Song, Loei Hendrick, Ng Shukie, Nyein Nyein Thaw Dar, Yip Ai Kia, Liu Yachao
  • PPT (5Mb), Supplementary Material
    Presenters: Ang Seah Fang, Chin Fei Li, Chong Mei Ling, Kang Jia, Ivan Low, Leow San Min, Yu Jia
• Prions: Structural phenotype and disease
  • PPT (4Mb)
    Presenters: Jaichandran S/O Sivalingam, Sonia Baig, Zahra Kabiri, Abdul Qader Al-Aidaroos, Lim Wei Xun Vanessa, Faisal Mahmood Cheema, Joanne James
• Bioinformatics of Avian Influenza Virus
  • PPT (6Mb)
    Presenters: Jing Ma, Li Song, Tan Tong San, Toh Yong En Joanne, Widyawilis Bte Selamat, Yeo Ailing, Zhou Fan
• Dengue Virus Peptides and their immunogenicity
  • PPT (5Mb)
    Presenters: Chew Sin Chi, Lim Siok Liu, Chua Jin Shun Anthony, Tong Wen Hao, Melvin Tan Lik Chern
• Caspases, Apoptosis and the Degradome
  • PPT (2Mb)
    Presenters: Ildasolha Bte Jamari, Oh Man Huan Veronica, Wang Sihui, Wong Hui Hui, Yeo Yee, Zhuo Jingli

MDG5101 Bioinformatics 2007/2008

Administrative Instructions

1. Class of Semester 2 2007/2008 - Apr 2008.
   1. Class Lecture (See IVLE8 website)
   2. Class MiniProject Instructions (See IVLE8 website)
   3. Class Presentations Apr08ppts (to be uploaded)
   4. Bioslax Demo
2. Class of Semester 2 2006/2007 - Apr 2007.
   1. Class Presentations Apr07ppts
   2. All passed
3. Class of Semester 1 2006/2007 - October 2006.
   1. All passed
4. Class of Sem2 2005/2006 - March 2006
   1. Schedule
      1. 20 Mar 06 Mon: Practical Hands-on: S1A L4 LS Lab5 4:00pm to 5:30pm
         1. Media:Mdg5101instructions.doc Introductory Instructions 17th March 2006
         2. [IVLE ppt parts 1 to 3] Introductory Lecture given on 17th March 2006 (need IVLE login)
      2. 22 Mar 06 Wed: Practical Hands-on: S1A L4 LS Lab5 10:00am to 12nn
      3. 31 Mar 06 Fri: Grp Class Presentation: LT29 4pm-6pm (Assessed)
   2. Class Presentation (Successfully completed; ppts uploaded)
      1. 15 minutes per group;
      2. approx 10 slides (free format, no template)
      3. Class Presentations Slides Mar06ppts
      4. Class Q&A.
   3. Project Submission by 1 April 2006, 2359h
      1. 1 Apr06 2359h: Grp Wiki Submission (Assessed) (Upload site closed)
   4. All passed
   5. Offline Work
      1. AudioVideo Lectures of S* Alliance course faculty – reference material. See below (Not assessed)
      2. Homework Hands-on Self Learning Sessions. See Below (Not assessed)

1. Class Presentation and Written Report

(Forthcoming Projects Mar/Apr 2008 will be placed here when they are completed on 4 April 2008)

Group1-08 Prj1:

• DNA Sequence Controls Expression Of Gene Involved In Cancer
• 8 Participants: Ko Hui Ling; Lee Zhiying; Low Pey Yng; Chia Wan Jie; Low Kee Chung; Lau Siang Lin; Lean Choo Bee; Ch'ng Jun Hong
• PPT: https://everest.bic.nus.edu.sg/mdg5101/Mar2008/Group1-08.ppt xMbytes (Time of presentation: 4pm)

Group2-08 Prj2:

• Prion Evolution: Structural Connections
• 7 Participants: Tan Peck Yean; Ng Inn Chuan; Keven Ang; Earnest Medoz; Chng Wee Joo; Alvin Loo; Lai Ruenn Chai
• PPT file: https://everest.bic.nus.edu.sg/mdg5101/Mar2008/Group2-08.ppt xMbytes (Time of presentation: 4.15pm)

Group3-08 Prj1:

• DNA Sequence Controls Expression Of Gene Involved In Cancer
• 8 Participants: Cheryl Chan; Lai Jesyin; Liu Jie; Cheng Fei; Chong Pei Yi; Naajia Nur Shahida Bte Mohamed Isa; Toh Soo Ting; Phong Wai Yee
• PPT file: https://everest.bic.nus.edu.sg/mdg5101/Mar2008/Group3-08.ppt xMbyte(Time of presentation: 4.30pm)

Group4-08 Prj4:

• Bioinformatics of Avian Influenza Virus
• 6 Participants: Tao Jiong; Wang Binbin; Huang Hua; Wu Yan; Huan Xuelu; Sheryl Tan Sher Lan
• PPT file: https://everest.bic.nus.edu.sg/mdg5101/Mar2006/Group4-08.ppt xMbytes (Time of presentation: 4.45pm)

Group5-08 Prj7:

• Dengue Virus Peptides and their immunogenicity
• 7 Participants: Catherine Pan Qiurong; Tan Yong Wah; Ye Fan; Lai Cheng Yu; Zheng Weiling; Justin Heng Kiang; Chen Wenhui
• PPT file: https://everest.bic.nus.edu.sg/mdg5101/Mar2006/Group5-08.ppt 1Mbyte (Time of presentation: 5.00pm)

Group6-08 Prj6:

• AntiMicrobial Peptides
• 8 Participants: Ma Dongrui; Deepak Choudhury; Yin Hui; Shareef Mohideen Ismail; Asarani Pezhummoottil Vasudevan Nair; Sim Xiuling; Eliana Cecilia Martinez Valencia; Nin Sijin Dawn
• PPT file: https://everest.bic.nus.edu.sg/mdg5101/Mar2008/Group6-08.ppt xMbyte (Time of presentation: 5.15pm)

Group7-08 Prj8:

• Caspases, apoptosis and degradome
• 7 Participants: Serena Seah Bee Kee; Patricia Tay Pei Wen; Kyaw Htet Hlaing; Goh Shijie; Lee Soo Fern; Lim Shuhui; Bhuvaneshwari D/O Shunmuganathan
• PPT file: https://everest.bic.nus.edu.sg/mdg5101/Mar2008/Group6-08.ppt xMbyte (Time of presentation: 5.30pm)

2. Course Lecture/Practical/Assessment

• Media:Mdg5101instructions.doc Introductory Instructions 26 March 2008
• [IVLE ppt parts 1 to 3] Introductory Lecture given on 26th March 2008 (need IVLE login)
• 28 Mar 08 Fri: Demo LT29
• 4 Apr 08 Fri: Grp Class Presentation: LT29 (Assessed)
  • 15 minutes per group;
  • approx 10 slides (free format, no template)
  • Class Q&A.
• Offline: AudioVideo Lectures of S* Alliance course faculty – reference material. See below (Not assessed)
• Offline: Homework Hands-on Self Learning Sessions. See Below (Not assessed)

Software Download

• BioSlax
• APBioKnoppix2 General Information
• APBioKnoppix2 version 1.02 iso Download Save into your drive and burn into CD in iso image mode (700MBytes - huge, download only in campus)

Newcomers

• Please see User's Guide for usage and configuration help.
• Formatting guide
• HTML reference http://www.december.com/works/hcu/quickref.html

References

• LSM2104 Class Notes on Basic Bioinformatics
• S* Life Science informatics Alliance Homepage of audiovideo course materials in Introductory Bioinformatics
• S* Course Lectures Repository
• Tutorial ppts and other materials