| Data | Description | Source | Organisation | Resource Link | Status | Frequency of Update | Level of Guarantee | Usage Restrictions |
|---|
| BLAST | BLAST Web Portal | | NUS-BIC | Link | Operational | NA | NA | NUS |
| ClustalW | ClustalW Web Portal | | NUS-BIC | Link | Operational | NA | NA | None |
| CysView | A tool facilitating the grouping of entries in a database (Swissprot or GenBank format-based) by similar disulfide bridge patterns, 'disulfide connectivity patterns' | | I2R | Link | Operational | NA | NA | None |
| DNAFSMiner | DNA sequences are an important type of biomedical data that contains many biologically meaningful functional sites such as transcription start site, coding region, translation initiation site, splice site, polyadenylation signal and so on. Our DNA functional site miner (DNAFSMiner) is a web-based software toolbox that aims to predict these functional sites in DNA sequences. There are two software tools. One is called TIS Miner which can be used to predict translation initiation site (TIS) in vertebrate mRNA, cDNA, or DNA sequences. The other is called Poly(A) Signal Miner which can be used to predict polyadenylation (poly(A)) signal in human DNA sequences. | | I2R | Link | Operational | NA | NA | None |
| Dragon Metabolome Explorer | System for exploring potential associations in the metabolic networks (pathways, enzymes and metabolites), ontologies (anatomy, developmental stages) and genes in Arabidopsis thaliana and other plants, based on mining PubMed documents | | I2R-NUS-DBS | Link | Operational | NA | NA | None |
| ESPript | ESPript, Easy Sequencing in Postscript, is a utility to generate a pretty PostScript output from aligned sequences | IBCP, France | NUS-BIC | Link | Operational | NA | NA | NA |
| GO Module Analyser | Go-Module Analyser is a Java 3D based program that visualizes the Go Modules on the protein structures and dynamically analyses the relation between the go-module boundaries and intron position in eukaryotic homologues. It is very useful in finding the optimum diameter in which the intron positions have maxium correspondence with module boundaries. | | NUS-BIC | Link | Operational | NA | NA | None |
| JEMBOSS | Java Emboss Portal | | NUS-BIC | Link | Operational | NA | NA | NUS |
| MGAlign | MGAlign (short for mRNA to Genome Alignments) is a webservice to quickly and accurately align mRNA sequences to genomic sequences on a personal computer | | NUS-BIC | Link | Operational | NA | NA | None |
| MoViES | Molecular vibrations evaluation server | | NUS-CSC | Link | Operational | NA | NA | None |
| NetCTL | NetCTL predicts CTL epitopes in protein sequences. The current version expands the MHC class I binding predicition to 12 MHC supertypes including the supertypes A26 and B39. The accuracy of the MHC class I peptide binding affinity is significantly improved compared to the earlier version. Also the prediction of proteasonal cleavage has been improved and the updated version has been trained on a set of 886 known MHC class I ligands. | Center for Biological Sequence Analysis, Technical University of Denmark | NUS-BIC | Link | Operational | NA | NA | None |
| PDB | Protien Data Bank | RCSB | RCSB | Link | Operational | NA | NA | None |
| S* Life Science Informatics Course Interface | S* Life Science Informatics Official Website | | S* Alliance | Link | Operational | NA | NA | None |
| SCOP | Structural Classification of Proteins Mirror | SCOP UK | NUS-BIC | Link | Operational | NA | NA | None |
| SDPMOD | A web service for comparative modelling of small disulphide-bonded proteins | | NUS-BIC | Link | Operational | NA | NA | None |
| Sequence Manipulation Suite (SMS) | The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. | University of Alberta | NUS-BIC | Link | Operational | NA | NA | None |
| SGM | Splicing Graph Modules (SGM) is a collection of Python modules housed within a Python package to draw splicing graphs (a form of visual representation of several transcript sequences which may exhibit alternative splicing). A web service is available for users to generate splicing graphs using a web browser. | | NUS-BIC | Link | Operational | NA | NA | None |
| SRS | Sequence Retrival System | | NUS-BIC | Link | Operational | NA | NA | None |
| SVMProt | Protein function prediction software | | NUS-CSC | Link | Operational | NA | NA | None |
| VAGAT | VAGAT is a Viral Antigenome Analysis Tool for systematic analyses of antigenic diversity from a set of viral protein sequences and mapping their targets of immune response | | I2R | Link | Operational | NA | NA | None |
| WEMBOSS | Emboss Web Portal | | NUS-BIC | Link | Operational | NA | NA | None |
| WEMBOSS II | Emboss Web Portal - with personal login and disk space | | NUS-BIC | Link | Operational | NA | NA | None |
| XdomView (Version 2.1) | A Graphical Tool for Protein Domain and Exon Position Visualization | | NUS-BIC | Link | Operational | NA | NA | None |